DIAGNijmegen / pathology-whole-slide-data Star 107 Code Issues Pull requests A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models. python deep-learning iterator wsd pathology whole-slide-imaging wsi computational-pathology wsm wsa histopathology whole-slide-image whole-slide-annotation whole-slide-mask whole-slide-dataset whole-slide-data Updated Nov 8, 2025 Python
okunator / cellseg_gsontools Star 16 Code Issues Pull requests Feature extraction from GEOJson nuclei and tissue segmentation maps graph-algorithms feature-extraction spatial-data-analysis morphological-analysis digital-pathology clustering-methods roi-selection nuclei-segmentation regionalization tissue-segmentation immune-infiltration whole-slide-image whole-slide-annotation Updated Jun 23, 2025 Python
DigitalSlideArchive / histomics-label Star 4 Code Issues Pull requests A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images python histology bioimage-informatics digital-slide-archive whole-slide-annotation whole-slide-images guided-labeling Updated Jun 20, 2025 Vue