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IRMA-core sampler for subsampling#84

Merged
samcwiley merged 5 commits intodevfrom
subsampler
Sep 3, 2025
Merged

IRMA-core sampler for subsampling#84
samcwiley merged 5 commits intodevfrom
subsampler

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@samcwiley samcwiley commented Sep 3, 2025

Adds IRMA-core sampler process to replace BBTools reformat.sh for subsampling single and paired-end reads.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).
@samcwiley samcwiley requested a review from mandysulli September 3, 2025 18:43
@samcwiley samcwiley self-assigned this Sep 3, 2025
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Looks great! Thank you!

@samcwiley samcwiley marked this pull request as ready for review September 3, 2025 20:18
@samcwiley samcwiley merged commit 4ba5d28 into dev Sep 3, 2025
@samcwiley samcwiley deleted the subsampler branch September 3, 2025 20:18
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