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Aspiring BioinforMAGICIAN
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Aspiring BioinforMAGICIAN
50 followers · 1 following

Achievements

Achievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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Organizations

@databio @campus-experts @NeuroLINCS @PlatigLab

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YogiOnBioinformatics/README.md

Hi 👋, I'm Yogindra Raghav (YogiOnBioinformatics)

Bioinformatics/Computational Biology Researcher at MIT and the Broad Institute of MIT and Harvard!



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⚡ CAPTAIN. LEADER. ASPIRING SCIENTIST/AUTHOR. PHILOSOPHER. ⚡

  • 💬 Ask me about:
Computational Genomics Computational Proteomics
Computational Drug Discovery Web Frontend Development
Data Science Data Engineering
Data Maintenance Containerization
Mentorship Working with Scientists & Consortiums
High-Performance Computing (HPC) Systems Cloud Computing
Bioinformatics Pipeline Creation/Maintenance Free & Open-Source Software (FOSS)

Platforms/Operating Systems

Linux

 Google Cloud

 Microsoft Azure

 Chrome OS

 Microsoft Windows

Languages

Python

 R

 Bash

 Java

 C++
HTML

 CSS

 JavaScript

 YAML

 Markdown

Technologies/Tools

Git

 GitHub

 GitLab

 Jupyter/JupyterLab

 Visual Studio Code
Flask

 Django

 NumPy

 SciPy

 Pandas
Docker

 Singularity

 WDL

 Terra

 Cromwell
Blender

 Globus

 Tmux

 Jekyll

 Matplotlib
SLURM







Bioinformatics Databases

NCBI GEO

 KEGG

 International Human Epigenome Consortium

 1000 Genomes

 RefSeq
dbSNP

 ClinVar

 XenBase

 antiSmash

 Protein Data Bank
UniProt

 PubChem

 PDBbind

 BindingDB

 DrugBank

Bioinformatics Tools

NCBI BLAST

 UCSC Genome Browser

 cutadapt

 HISAT2

 Bowtie2
Stringtie

 featureCounts

 DESeq2

 samtools

 bedtools
NCBI SRATools

 MACS

 MEME-ChIP

 HOMER

 IDR
deepTools

 Bioconductor

 EMBOSS

 MEGAX

 SWISS-MODEL
FTMap

 NAMD

 VMD

 g:Profiler

Stats

Profile Views:   profile counter



https://dev.to/yogionbioinformatics https://www.linkedin.com/in/yogionbioinformatics/ https://stackoverflow.com/users/10007125/yogionbioinformatics https://orcid.org/0000-0002-1285-6397

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  1. Computational-Drug-Discovery-Internship-at-Merck Computational-Drug-Discovery-Internship-at-Merck Public

    Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging…

    Python 4 2

  2. Maternal-to-Zygotic-Transition-in-Xenopus-laevis Maternal-to-Zygotic-Transition-in-Xenopus-laevis Public

    Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis

    Shell 1

  3. Teaching-Assistant-Computational-Genomics Teaching-Assistant-Computational-Genomics Public

    Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught…

    Shell 1

  4. Differential-Gene-Expression-Analysis-with-Machine-Learning-Using-Dexamethasone-Treatment-Data Differential-Gene-Expression-Analysis-with-Machine-Learning-Using-Dexamethasone-Treatment-Data Public

    Worked with fellow peers at University of Pittsburgh under supervision of Dr. Junshu Bao, Department of Statistics, University of Pittsburgh, to do a Differential Gene Expression Analysis on a Dexa…

    R 3 2

  5. ProteinVR ProteinVR Public

    Protein Virtual Reality is a University of Pittsburgh project with Dr. Jacob D. Durrant that is the world's first anatomical and protein visualization VR program tailored for collegiate-biology cou…

    Python 7 1

  6. Tumor-Exome-Mutation-Analysis Tumor-Exome-Mutation-Analysis Public

    Statistical analysis on Mutation Annotation Format files from Whole-Exome Sequencing of Tumor samples and Controls.

    Jupyter Notebook 2