Pinned Loading

1. PPIRef PPIRef Public

   Dataset and package for working with protein-protein interactions in 3D

   Jupyter Notebook 105 9

2. PPIformer PPIformer Public

   Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)

   Jupyter Notebook 55 5

3. mutils mutils Public

   Mutation utilities for protein design

   Jupyter Notebook 7 1

4. ProteinTTT ProteinTTT Public

   One protein is all you need (ICLR 2026)

   Jupyter Notebook 99 13

5. pluskal-lab/MassSpecGym pluskal-lab/MassSpecGym Public

   MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)

   Jupyter Notebook 116 13

6. pluskal-lab/DreaMS pluskal-lab/DreaMS Public

   Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)

   Jupyter Notebook 166 39