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1. tmux_quick_start tmux_quick_start Public

   Shell

2. FeatureFlow FeatureFlow Public

   Genome Feature annotations. Annotate a genome assembly with TEs (EarlGrey) and protein-coding genes (BRAKER3)

   Nextflow

3. Phased-nf Phased-nf Public

   A nextflow pipeline that can produce phased genome assemblies with hifi and hi-c reads

   Jupyter Notebook 1

4. pg4Findr pg4Findr Public

   Search for G-quadruplex motifs in sequencing reads and genome assemblies.

   Rust

5. fasta2embeddings fasta2embeddings Public

   Create embeddings out of any fasta/fastq nucleotide sequences. Great for downstream machine learning tasks.

   Python

6. simple-asm simple-asm Public

   A simple genome assembly pipeline.

   Nextflow