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GitHub Action workflow for running TauDEM tests #288

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Merged
pkdash merged 4 commits into from
Dec 19, 2025
Merged

GitHub Action workflow for running TauDEM tests #288

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47a7aed
feat: add GitHub Actions workflow for running TauDEM tests
pkdash Dec 16, 2025
c4e75fc
fix: update Makefile to dynamically set Linux triplet and MPI library…
pkdash Dec 16, 2025
79cc18d
fix: set environment variable for open mpi oversubscription in test w…
pkdash Dec 16, 2025
045aa3a
fix: update test workflow to set TAUDEM_PATH and PATH environment var…
pkdash Dec 16, 2025
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27 changes: 27 additions & 0 deletions .github/workflows/test.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,27 @@
name: Run TauDEM Tests

on:
push:
branches: [ "Develop" ]
pull_request:
branches: [ "Develop" ]

jobs:
test:
runs-on: ubuntu-latest

steps:
- name: Checkout code
uses: actions/checkout@v4

- name: Build Docker image
run: docker build -f Dockerfile-run.tests -t taudem-linux-run-tests .

- name: Run tests
run: |
docker run --rm -v $(pwd):/app taudem-linux-run-tests /bin/bash -c "
make clean && \
make release COMPILER=linux && \
make install && \
su - taudem-docker -c 'export TAUDEM_PATH=/usr/local/taudem && export PATH=/usr/local/taudem:\$PATH && export OMPI_MCA_rmaps_base_oversubscribe=1 && cd /app && make dk-run-tests'
"
18 changes: 14 additions & 4 deletions Makefile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,14 @@
UNAME_S := $(shell uname -s)
UNAME_M := $(shell uname -m)

# Determine Linux architecture triplet
ifeq ($(UNAME_M),x86_64)
LINUX_TRIPLET := x86_64-linux-gnu
else ifeq ($(UNAME_M),aarch64)
LINUX_TRIPLET := aarch64-linux-gnu
else
LINUX_TRIPLET := $(UNAME_M)-linux-gnu
endif

# Default build type
BUILD_TYPE ?= Debug
Expand Down Expand Up @@ -31,10 +41,10 @@ $(if $(filter linux,$1),\
-DCMAKE_CXX_COMPILER=/usr/bin/g++ \
-DMPI_C_COMPILER=/usr/bin/mpicc \
-DMPI_CXX_COMPILER=/usr/bin/mpicxx \
-DMPI_C_LIBRARIES=/usr/lib/aarch64-linux-gnu/libmpi.so \
-DMPI_CXX_LIBRARIES=/usr/lib/aarch64-linux-gnu/libmpi.so \
-DMPI_C_INCLUDE_PATH=/usr/lib/aarch64-linux-gnu/openmpi/include \
-DMPI_CXX_INCLUDE_PATH=/usr/lib/aarch64-linux-gnu/openmpi/include \
-DMPI_C_LIBRARIES=/usr/lib/$(LINUX_TRIPLET)/libmpi.so \
-DMPI_CXX_LIBRARIES=/usr/lib/$(LINUX_TRIPLET)/libmpi.so \
-DMPI_C_INCLUDE_PATH=/usr/lib/$(LINUX_TRIPLET)/openmpi/include \
-DMPI_CXX_INCLUDE_PATH=/usr/lib/$(LINUX_TRIPLET)/openmpi/include \
-DMPI_CXX_FOUND=TRUE,\
$(if $(filter macos,$1),-DCMAKE_C_COMPILER=/opt/homebrew/bin/gcc-15 -DCMAKE_CXX_COMPILER=/opt/homebrew/bin/g++-15 \
-DMPI_C_COMPILER=/opt/homebrew/opt/open-mpi/bin/mpicc \
Expand Down