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1. MDAnalysis/mdanalysis MDAnalysis/mdanalysis Public

   MDAnalysis is a Python library to analyze molecular dynamics simulations.

   Python 1.6k 821

2. pierrepo/PBxplore pierrepo/PBxplore Public

   A suite of tools to explore protein structures with Protein Blocks 🐍

   Python 30 15

3. MDAnalysis/panedr MDAnalysis/panedr Public

   Reads Gromacs EDR file to populate a pandas dataframe

   Python 33 8

4. proxy-bookmarklet proxy-bookmarklet Public

   Create a bookmarklet that add your academic proxy to journals URL

   CSS 2 1

5. Tsjerk/Insane Tsjerk/Insane Public

   INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems

   Python 82 41

6. xvg xvg Public

   Manipulate grace file in python

   Python 2