🏃🏃 Your next-gen single-cell Foundation Model

A complete AI agency at your fingertips - From frontend wizards to Reddit community ninjas, from whimsy injectors to reality checkers. Each agent is a specialized expert with personality, processes…

Dan Siroker, if you're reading this: bro. cmon.

screenpipe turns your computer into a personal AI that knows everything you've done. record. search. automate. all local, all private, all yours.

my Ph.D. Thesis: transformers on single cell RNA-seq as large cell models

fork of scPRINT for the Xpressor and ESM2-finetuning ICML paper

Official repository of "ODesign: A World Model for Biomolecular Interaction Design"

Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse

tfw when you when your lid when uhh angle your lid sensor

Spatial alignment of single cell transcriptomic data.

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

We are working on the AML pedDep project with DFCi & the BroadInsitute, looking at CRCs and their relation to genomic dependencies

Jkobject website

Awesome GRN enhanced AnnData toolkit

a simpler version of the flashattention2 package, easy to install, with GQA, cross and self attention

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

BioMCP: Biomedical Model Context Protocol

Triton implementation of FlashAttention2 that adds Custom Masks.

Automated cell type annotation from rich, labeled reference data

Removing noise in sparse single-cell RNA-sequencing count data

Test genes for Spatial Variation

Official repository for the Boltz biomolecular interaction models