I'm Kübra Narcı, a Bioinformatician at the GHGA Workflows Team based in DKFZ (German Cancer Research Institute), specializing in worklfow development mostly using Nextflow. With a strong passion for creating reproducible and FAIR-compliant workflows, I contribute to advancing bioinformatics standards and tools.
I’m also proud to be a Nextflow Ambassador, actively supporting and promoting the Nextflow community by sharing knowledge and best practices in workflow development.
- Role: Bioinformatician and Bioinformatics Workflow Engineer
- Location: Heidelberg, Germany
- Organization: GHGA / DKFZ-ODCF
- Values: Reproducibility, FAIR Principles, Community Collaboration
- FAIR-Compliant Workflow Design: Teaching principles and practices to develop workflows that align with FAIR guidelines.
- Standardizing and harmonizing NGS analysis workflows
- GHGA Webinar: Harmonization of NGS Workflows Part 1
- GHGA Webinar: Harmonization of NGS Workflows Part 2
- GHGA Webinar: Benchmarking of NGS Workflows Part 1
- GHGA Webinar: Benchmarking of NGS Workflows Part 2
- NFDI Talk: Standardization of GHGA workflows using nf-core and nextflow
- ISMB/ECCB 2023: Standardizing and harmonizing NGS analysis
- Nextflow Summit 2024:Leveraging Nextflow for the development of FAIR-compliant somatic variant calling workflows
- Biyoenformatik Analizlerde Tekrarlanabilirlik
- nf-core/bytesize: nf-core/variantbenchmarking
Here are some of open resourse projects I’ve been working on:
A standardized Nextflow pipeline for benchmarking variant-calling workflows, enabling reproducible and FAIR analysis.
View Repository
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Indel Calling Workflow: A Nextflow-based indel calling workflow using Platypus.
View Repository -
SNV Calling Pipeline: A Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF's SNVCallingWorkflow.
View Repository -
ACE-Seq Pipeline: A Nextflow ACE-Seq calling and annotation pipeline.
View Repository -
CNVkit Calling Pipeline: A Nextflow CNVkit calling and annotation pipeline.
View Repository -
GRZ QC Pipeline: A Nextflow pipeline to compute QC metrices for genome centers as part of GRZ. View Repository
View my professional cv as a template
- Bioinformatician at GHGA: Driving the development of reproducible genomic workflows.
- Nextflow Ambassador: Actively supporting and promoting the Nextflow community as part of my values.
- FAIR Principles Advocate: Passionate about creating workflows that are Findable, Accessible, Interoperable, and Reproducible.
- Workshop Organizer and Educator: Empowering others to succeed in workflow development and reproducibility.
- LinkedIn: in/kubranarci
Feel free to explore my repositories and reach out if you’d like to collaborate or discuss anything on workflow development. Let’s work together to advance bioinformatics!