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feat(processing): add module to process inlining#408

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inlining-inference
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feat(processing): add module to process inlining#408
Silvanoc wants to merge 2 commits intomainfrom
inlining-inference

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@Silvanoc Silvanoc commented Jul 17, 2025

Trying to address issue 2813 inconsistencies have been identified WRT how object inlining is behaving depending on the values of inlined, inlined_as_list and the presence/absence of an identifier in the range class. These inconsistencies appear from the fact that no normalization is happening on schema loading (not only in SchemaLoader, but also in SchemaView) and some consumers apply their own logic.

This patch provides a module that should be used on any schema loading (as of now SchemaLoader and SchemaView) to have a common behavior. The code is structured in a way that it covers all potential combinations in an easy to understand manner.

Unit testing is also provided for the module.

@Silvanoc Silvanoc force-pushed the inlining-inference branch 2 times, most recently from a9453e1 to 36ac9be Compare July 17, 2025 20:02
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codecov bot commented Jul 17, 2025

Codecov Report

Attention: Patch coverage is 82.00000% with 9 lines in your changes missing coverage. Please review.

Project coverage is 64.59%. Comparing base (346f415) to head (36ac9be).

Files with missing lines Patch % Lines
linkml_runtime/processing/inlining.py 82.00% 3 Missing and 6 partials ⚠️
Additional details and impacted files
@@ Coverage Diff @@ ## main #408 +/- ## ========================================== + Coverage 64.49% 64.59% +0.09%  ========================================== Files 62 63 +1 Lines 8849 8899 +50 Branches 2557 2566 +9 ========================================== + Hits 5707 5748 +41  - Misses 2533 2536 +3  - Partials 609 615 +6 

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@Silvanoc Silvanoc force-pushed the inlining-inference branch 4 times, most recently from 8d5c49e to cc376f4 Compare July 18, 2025 16:55
Silvanoc added 2 commits July 21, 2025 10:03
Trying to address issue 2813 [1] inconsistencies have been identified WRT how object inlining is behaving depending on the values of `inlined`, `inlined_as_list` and the presence/absence of an identifier in the range class. These inconsistencies appear from the fact that no normalization is happening on schema loading (not only in SchemaLoader, but also in SchemaView) and some consumers apply their own logic. This patch provides a module that should be used on any schema loading (as of now SchemaLoader and SchemaView) to have a common behavior. The code is structured in a way that it covers all potential combinations in an easy to understand manner. Unit testing is also provided for the module. [1]: linkml/linkml#2813 Signed-off-by: Silvano Cirujano Cuesta <silvano.cirujano-cuesta@siemens.com>
Use created module to process object inlining. Signed-off-by: Silvano Cirujano Cuesta <silvano.cirujano-cuesta@siemens.com>
@Silvanoc Silvanoc force-pushed the inlining-inference branch from cc376f4 to 7c2a6ec Compare July 21, 2025 08:03
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This PR will make more sense after merging into linkml to have a monorepo.

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