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Clustered heatmap #5646

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4759d31
Initial commit of clustered heatmap
olgabot Dec 5, 2013
d8eb771
Fixed bugs that arose while making an example. Funny how that happens!
olgabot Dec 5, 2013
7e2b64d
Added citation of Chris DeBoever
olgabot Dec 5, 2013
94a92c5
Added some docstrings
olgabot Dec 5, 2013
b6ce06c
Added some docstrings
olgabot Dec 5, 2013
049a36e
Changed exceptions to AssertionErrors
olgabot Dec 5, 2013
a190062
Fixed relabeling of columns
olgabot Dec 5, 2013
e955409
Fixed some PEP8 and other formatting stuff
olgabot Dec 5, 2013
c0f03d8
Changed default sequential colormap to YlGnBu and explained "divergen…
olgabot Dec 5, 2013
f82ebb4
Changed dictionary comprehension to explicit dict() call on generated…
olgabot Dec 5, 2013
7634d20
fixed incomplete typo undoing
olgabot Dec 5, 2013
5ee83c0
Fixed yticklabel indexing so yticklabels could be just a list of stri…
olgabot Dec 5, 2013
542f10d
Made AssertionError of label_cols and label_rows more descriptive
olgabot Dec 5, 2013
de47e83
Removed extraneous print statements
olgabot Dec 5, 2013
f4c2f27
Removed more extraneous print statements
olgabot Dec 5, 2013
8f03b1e
Changed docstrings to reStructuredText and added linewidth+edgecolor …
olgabot Dec 5, 2013
2517e71
Fixed log scale vmin/vmax stuff and added some more parameters for us…
olgabot Dec 5, 2013
8286c88
Added width ratio finder for various colorbar locations (but otherwis…
olgabot Dec 5, 2013
fd195b1
Changed clustering to operate on log10 of the data if the color_scale…
olgabot Dec 5, 2013
ae86982
Added acknowledgement to Michael Lovci
olgabot Dec 6, 2013
ff63dd9
Added fastcluster as optional import for really large matrices
olgabot Dec 6, 2013
c191812
added fastcluster argument to heatmap function
olgabot Dec 6, 2013
ee8bdec
Was clustering on log10(df) all the time?? fixed to only do so when c…
olgabot Dec 6, 2013
7caf10b
added metric option for calculating distances
olgabot Dec 6, 2013
87e989d
added metric option for calculating distances
olgabot Dec 6, 2013
b7b2340
removed extraneous spaces
olgabot Dec 6, 2013
4c31c6c
set default linkage method to average
olgabot Dec 6, 2013
a2a1313
changed any(df) to df.any()
olgabot Dec 8, 2013
0707d0f
Changed AssertionError's to ValueError's
olgabot Dec 16, 2013
b2e4552
Added docstring explaining get_width_ratios
olgabot Dec 16, 2013
d6785a2
Unified row and column linkage methods
olgabot Dec 16, 2013
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