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Achievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Shark

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raymondkiu/README.md

Dr Raymond Kiu

🧑‍🔬Research Fellow/ Bioinformatician/ Microbiologist
📍University of Birmingham, UK
🔬Microbial Genomics, Metagenomics, Transcriptomics
🦠Gut Microbiome🧬, Clostridium, Enterococcus, Bifidobacterium

Google Scholar | ORCID | BlueSky | LinkedIn

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  1. sequence-stats sequence-stats Public

    Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA. Written in Bash. All in one place.

    Shell 16 1

  2. GenomeFetch GenomeFetch Public

    GenomeFetch: a fast, user-friendly bacterial genome assembly retrieval tool for RefSeq and GenBank.

    Shell 1

  3. fqtk fqtk Public

    fqtk: A toolkit to perform common tasks on FASTQ reads. Rename FASTQ identifiers, print FASTQ statistics and convert FASTQ to FASTA. This program is written in AWK and Bash.

    Shell 2

  4. bioinformatics-tools bioinformatics-tools Public

    Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix and suffix) etc

    Shell 23 6

  5. R-scripts-graphing-statistics R-scripts-graphing-statistics Public

    My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

    R 12 2

  6. fastq-info fastq-info Public

    Calculate fastq reads and sequencing coverage

    Shell 15 2