nextstrain / nextclade Star 252 Code Issues Pull requests Discussions Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement science research virus sequencing next-generation-sequencing dna rna influenza sequences strain nextstrain ncov coronavirus covid-19 covid covid19 sars-cov-2 neherlab clades clade Updated Mar 17, 2026 TypeScript
nextstrain / ncov-clades-schema Star 17 Code Issues Pull requests Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain phylogenetics nextstrain sars-cov-2 clades Updated Nov 24, 2025 JavaScript
abichat / yatah Star 6 Code Issues Pull requests Yet Another TAxonomy Handler. taxonomy clades Updated Apr 13, 2024 R
nextstrain / flu_frequencies Star 5 Code Issues Pull requests Flu clade and mutation frequencies mutations influenza flu clades Updated Feb 14, 2025 TypeScript
PathoGenOmics-Lab / tcfinder Star 1 Code Issues Pull requests A lightweight tool to find clusters of samples within a phylogeny rust bioinformatics clustering phylogenetics bioconda clades Updated May 2, 2025 Rust
karubiotools / hsp60ECCtool Star 0 Code Issues Pull requests This script allows to get Enterobacter cloacae complex hsp60 cluster from a multi-Fasta file bioinformatics genomics clades enterobacter Updated Nov 8, 2021 Perl
maxbiostat / cladeCorrelation Star 0 Code Issues Pull requests Code for calculating correlations between clade indicators. biostatistics phylogenetics correlation-matrices clades Updated Jul 17, 2023 R