A set of ready to use scientific skills for Claude
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
A comprehensive library for computational molecular biology
Working with molecular structures in pandas DataFrames
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
Interactive network visualization in Python and Dash, powered by Cytoscape.js
🏆 #1 Multi-LLM consensus framework | 550+ stars | 95% accuracy | 10+ LLM providers | Leading cell annotation tool
COBRApy is a package for constraint-based modeling of metabolic networks.
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
DANCE: a deep learning library and benchmark platform for single-cell analysis
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
dna2vec: Consistent vector representations of variable-length k-mers
CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
Mixed continous/categorical flow-matching model for de novo molecule generation.
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