muon is a multimodal omics Python framework
muon scrna-seq multi-omics multimodal-data cite-seq scanpy scatac-seq anndata multimodal-omics-analysis mudata scverse
- Updated
Nov 10, 2025 - Python
#
multi-omics
Here are 26 public repositories matching this topic...
Multimodal Data (.h5mu) implementation for Python
- Updated
Oct 29, 2025 - Python
Multi-task deep learning framework for multi-omics data analysis
- Updated
May 5, 2022 - Python
Single-cell multi-omics integration using Optimal Transport
matrix-factorization single-cell dictionary-learning optimal-transport multi-omics multi-omics-integration
- Updated
Aug 14, 2025 - Python
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
- Updated
Jul 10, 2024 - Python
factor models for omics data
- Updated
Dec 3, 2025 - Python
Disease subnetwork detection with explainable Graph Neural Networks
- Updated
May 12, 2024 - Python
HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.
- Updated
Aug 23, 2025 - Python
molly, an LLM designed to understand multi-omics data.
- Updated
Dec 2, 2025 - Python
Flexible omics pipeline
bioinformatics rna-seq snakemake pipeline metagenomics extensible hacktoberfest ymp conda-environment multi-omics omics-pipeline hacktoberfest-accepted hacktoberfest2022
- Updated
Oct 16, 2025 - Python
gNOMO2 allows integrated multi-omics analyses of microbiomes
- Updated
Aug 7, 2024 - Python
The SUbgraph BAsed mulTI-OMIcs Clustering (SUBATOMIC) framework infers interpretable modules with a specific topology.
- Updated
Nov 17, 2025 - Python
Accompanying code for Image2Omics
- Updated
Aug 29, 2023 - Python
Data and scripts to reproduce experiments for Mowgli.
- Updated
Apr 1, 2024 - Python
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
machine-learning deep-learning convolutional-neural-networks cancer-research multi-omics graph-neural-networks drug-response-prediction graph-transformer
- Updated
Aug 14, 2025 - Python
Multimodal datasets, in MuData format
- Updated
Jan 13, 2023 - Python
Code for the paper "scBridge embraces cell heterogeneity in single-cell RNA-seq and ATAC-seq data integration"
- Updated
Mar 25, 2024 - Python
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
machine-learning deep-learning convolutional-neural-networks cancer-research multi-omics graph-neural-networks drug-response-prediction graph-transformer
- Updated
Jun 23, 2025 - Python
Multi-omics differential dependency network inference
- Updated
Mar 7, 2025 - Python
Improve this page
Add a description, image, and links to the multi-omics topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the multi-omics topic, visit your repo's landing page and select "manage topics."