Linked Questions
12 questions linked to/from How to compute varimax-rotated principal components in R?
2 votes
0 answers
467 views
PCA rotation and principal component scores [duplicate]
This is my first post so apologies for any incorrect formatting or whether this has been answered elsewhere but I seem to be going around in circles. Basically, I have 12 survey plots and have ...
73 votes
8 answers
64k views
Is PCA followed by a rotation (such as varimax) still PCA?
I have tried to reproduce some research (using PCA) from SPSS in R. In my experience, principal() function from package psych ...
25 votes
1 answer
56k views
Methods to compute factor scores, and what is the "score coefficient" matrix in PCA or factor analysis?
As per my understanding, in PCA based on correlations we get factor (= principal component in this instance) loadings which are nothing but the correlations between variables and factors. Now when I ...
10 votes
1 answer
8k views
Using varimax-rotated PCA components as predictors in linear regression
After doing PCA, the first component describes the largest part of variability. This is important e.g. in study of body measurements where it is commonly known (Jolliffe, 2002) that PC1 axis captures ...
10 votes
1 answer
12k views
R PCA: principal (psych package) vs prcomp loadings
I have a couple of questions regarding differences in loading values when using prcomp and principal (from the ...
4 votes
1 answer
8k views
Why do the loadings returned by psych::principal() in R change with the number of components?
I have been using the principal() function of the psych package in R and setting the number of components after a scree plot analysis (...
5 votes
0 answers
2k views
How to compute component or factor scores when the analysis is based on polychoric/tetrachoric correlations?
[This question is modified based on suggestion from @ttnphns] I am doing linear principal component analysis (PCA) based on polychoric correlations between the variables (rather than on native Pearson ...
2 votes
0 answers
2k views
Calculating Absolute Principal Component Scores from varimax-rotated principal components scores
In many receptor-modeling studies, after performing the PCA analysis, they often "rescale" their varimax-rotated PC scores (which are standardized with mean zero and standard deviaiton of 1) to ...
1 vote
0 answers
2k views
How to compute explained variances in PCA with varimax rotation?
I've done a PCA and varimax-rotated the EOF loadings (i.e. eigenvectors of the covariance matrix scaled by the square roots of the respective eigenvalues) and calculated the rotated PCs by multiplying ...
1 vote
2 answers
710 views
Correlated component scores after PCA with varimax rotation in Stata
I have a dataset with 6 personality traits for 155 individuals that are highly correlated. To get rid of multicollinearity (and potential noise in the original variables) in my regression analysis, I ...
1 vote
1 answer
222 views
Extrapolate Principal Components Factors with other variables in the components
Hi StackExchange Community, I am performing a Principal Components Analyses (PCA). I would like to know how to extrapolate some PCA components with other variables that were not considered in the PCA ...
2 votes
0 answers
212 views
Inconsistent varimax rotated scores from robust PCA output
This great answer shows how to compute varimax-rotated loadings and scores from PCA results using princomp. I am conducting a robust PCA analysis using the pcaHubert function from the rrcov package. ...