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I'm using glossaries-extra to define glossaries entries accepting parameters. To what I gathered from the glossaries documentation along with the fourth method of this post, I ended up with the following MWE.

\documentclass{book} \usepackage[hidelinks]{hyperref} \usepackage[debug=all, automake]{glossaries-extra} \newglossary[slg]{symbolslist}{syi}{syg}{Notations} \makeglossaries \newcommand{\orthogonal}[1]{\ensuremath{\mathcal{O}_{#1}}} \newglossaryentry{orthogonal}{% user1={orthogonal},% name=\ensuremath{\orthogonal{d}},% description={The orthogonal group in dimension \(d\)}, type=symbolslist } \begin{document} Here's \gls{orthogonal} and \glsxtrfmt{orthogonal}{5} and \glslink{orthogonal}{\orthogonal{7}}. \printglossaries \end{document}

However, this results in a weird dot appearing before the printing of the \gls and \glslink commands. Why is that the case, and how could I remove it?

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You have asked glossaries-extra to mark write operations using debug=all (which includes debug=showwrgloss), which is what you see. The marker is unrelated to the argument of \orthogonal. Remove the debugging option and the marker will go away.

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