I wrote a partition table manually during a system installation which contains an encrypted part, the /boot partition and an unpartitioned rest. Although I first created the partitions (manually each) and put them in one logical volume. The logical volume important is filled up with the volume group a (if it cannot be this way, please correct; if you know it must be this way, please remove this note). Afterwards, I encrypted the logical volume with LUKS and installed the system.
partition table
$ LC_ALL=C sudo lsblk [sudo] password for sj126: NAME MAJ:MIN RM SIZE RO TYPE MOUNTPOINT sda 8:0 0 931.5G 0 disk |-sda1 8:1 0 953M 0 part /boot |-sda2 8:2 0 1K 0 part |-sda3 8:3 0 16G 0 part [SWAP] |-sda4 8:4 0 100G 0 part |-sda5 8:5 0 7.5G 0 part | `-experiment-test 254:0 0 418.3G 0 lvm | `-experiment-test_crypt 254:1 0 418.3G 0 crypt / |-sda6 8:6 0 14G 0 part | `-experiment-test 254:0 0 418.3G 0 lvm | `-experiment-test_crypt 254:1 0 418.3G 0 crypt / |-sda7 8:7 0 372.5G 0 part | `-experiment-test 254:0 0 418.3G 0 lvm | `-experiment-test_crypt 254:1 0 418.3G 0 crypt / |-sda8 8:8 0 7G 0 part | `-experiment-test 254:0 0 418.3G 0 lvm | `-experiment-test_crypt 254:1 0 418.3G 0 crypt / |-sda9 8:9 0 7G 0 part | `-experiment-test 254:0 0 418.3G 0 lvm | `-experiment-test_crypt 254:1 0 418.3G 0 crypt / |-sda10 8:10 0 7G 0 part | `-experiment-test 254:0 0 418.3G 0 lvm | `-experiment-test_crypt 254:1 0 418.3G 0 crypt / |-sda11 8:11 0 2.3G 0 part | `-experiment-test 254:0 0 418.3G 0 lvm | `-experiment-test_crypt 254:1 0 418.3G 0 crypt / `-sda12 8:12 0 1.1G 0 part `-experiment-test 254:0 0 418.3G 0 lvm `-experiment-test_crypt 254:1 0 418.3G 0 crypt / $ LC_ALL=C sudo partitionmanager QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-root' Loaded backend plugin: "pmlibpartedbackendplugin" "Using backend plugin: pmlibpartedbackendplugin (1)" "Scanning devices..." "Device found: [...]" blkid: unknown file system type "" on "/dev/sda2" "Partition ‘/dev/sda2’ is not properly aligned (first sector: 1955838, modulo: 2046)." "Scan finished." The point is that when browsing my dirs, only /boot on /dev/sda2 appears as a (separate) partition, the residual parts in / seem to be on the same partition. dev/sda{5,..12} should become partitions containing /home, e. g., stay in the same logical volume and should also be mounted there.
EDIT: The following is my partition table (updated). The partitions 3 and 4 are the beginning of a workaround and may be ignored for now. The only things left out are the disk label and the disk identifier.
$ LC_ALL=C sudo fdisk -l /dev/sda Disk /dev/sda: 931.5 GiB, 1000204886016 bytes, 1953525168 sectors Disk model: [...] Units: sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 4096 bytes I/O size (minimum/optimal): 4096 bytes / 4096 bytes Disklabel type: dos Disk identifier: [...] Device Boot Start End Sectors Size Id Type /dev/sda1 * 2048 1953791 1951744 953M 83 Linux /dev/sda2 1955838 879298559 877342722 418.4G 5 Extended /dev/sda3 879300608 912855039 33554432 16G 82 Linux swap / Solaris /dev/sda4 * 912857088 1122572287 209715200 100G 83 Linux /dev/sda5 1955840 17577983 15622144 7.5G 8e Linux LVM /dev/sda6 17580032 46874623 29294592 14G 8e Linux LVM /dev/sda7 46876672 828125183 781248512 372.5G 8e Linux LVM /dev/sda8 828127232 842774527 14647296 7G 8e Linux LVM /dev/sda9 842776576 857423871 14647296 7G 8e Linux LVM /dev/sda10 857425920 872073215 14647296 7G 8e Linux LVM /dev/sda11 872075264 876955647 4880384 2.3G 8e Linux LVM /dev/sda12 876957696 879298559 2340864 1.1G 8e Linux LVM Partition 2 does not start on physical sector boundary. Partition table entries are not in disk order. $ LC_ALL=C sudo lvs LV VG Attr LSize Pool Origin Data% Meta% Move Log Cpy%Sync Convert test experiment -wi-ao---- <418.32g $ LC_ALL=C sudo pvs PV VG Fmt Attr PSize PFree /dev/sda10 experiment lvm2 a-- 6.98g 0 /dev/sda11 experiment lvm2 a-- 2.32g 0 /dev/sda12 experiment lvm2 a-- 1.11g 0 /dev/sda5 experiment lvm2 a-- <7.45g 0 /dev/sda6 experiment lvm2 a-- 13.96g 0 /dev/sda7 experiment lvm2 a-- <372.53g 0 /dev/sda8 experiment lvm2 a-- 6.98g 0 /dev/sda9 experiment lvm2 a-- 6.98g 0
sudo parted /dev/sda unit s print freeto the question.parted /dev/sda unit s print freeor fromfdisk -l /dev/sda? I have no idea what PCManFM is.fdisk -l /dev/sda, especially the physical / logical sector size. Look at the lines for/dev/sda7,8and9: they all have the same number of sectors, 14647296, but their capacity varies from 6 to 8 GB. This must be a joke.lvsandpvscommands. So far, it looks like you've actually made a number of partitions, then made each of them into LVM PVs, added all of them to a VG namedimportant, then made one big LV namedausing all the PVs, then encrypted it.