Questions tagged [ggplot2]

Question 1

Good morning, I was wondering if anyone could assist me with the following: I am struggling to add a statistical test to this boxplot like a bar (preferably with Wilcox test). I tried with adding ...

Question 2

I am trying to generate a plot with mean and standard deviation but I am having some difficulty with the legend. As you can see from the image, the legend title "Statistics" appears two ...

Question 3

I am trying to plot a host-parasite-pathogen network using a sankey graph and I am having problems scaling the nodes to their occurrence (counts). The main issue is that the host count is nested in ...

Question 4

Good afternoon, I am trying to add the n for each of the subgroups in females and males (not just for the total in male (n=107) and female (n=94)). However, I havent found a way to do so: The ...

Question 5

Good afternoon, I am trying for a while now to wrap these labels in my plot (I want that it goes to the next line instead of making a very long line). I tried with the scales package in R, but it ...

Question 6

I'm wondering how can I show unique gene names in the volcano plot. My data looks like, ...

Question 7

I need to create a barplot with error bars, my data consists of 2 groups called "Genot", with 3 sub-groups "Suberin" for each, associated with a value "Percent". ...

Question 8

Can someone help hint me how I can interpret ordinal logistic regression coefficients and how I can use the .L, .Q and .C terms to calculate probabilities? I am analysing a dataset, where people ...

Question 9

I have a simple dataframe that includes points where the x values are 0, 1, 2, 3, 4, and 7. When I go to plot the data this is what ggplot2 gives me: I only want to include the points mentioned above....

Question 10

I'm trying to make a plot that looks like this: This is a rudimentary plot I did in excel. It's a plot of reads by length. Very simple nothing crazy to it. The important thing to note is that it's ...

Question 11

How do we plot histogram in R\Python with two variables[BC and Control] and their corresponding gene names examples is below: Thank you,

Question 12

I have a Seurat object and plotted the Dimplot for UMAP visualization for 2 variables, as shown in the image below. Now, the problem is that I want the group by variables such as ...

Question 13

I have plotted a heat-map with 235 rows and 570 columns which is below: how do we make clear names of row and columns on this graph using R?

Question 14

I can create an Upset plot with the input file, which can be found here ...

Question 15

This question was also asked on Biostars I have tried to use UpsetR to visualise the input file, which can be found here. How is it possible to make UpsetR accept an order defined in ...

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Questions tagged [ggplot2]

Add statistical test to this ggplot boxplot in R

Legends with ggplot

Sankey plot for unequal node sizes

ggplot with stat_n_text with n for subgroups

Wrap names in ggplot in R

Volcano Plot: How to show unique gene names in the plot?

stacked barplot with error bars

Intepreting and applying ordinal logistic regression coefficients to calculate probabilities?

Removing missing categories from geom_bar

change the order in ggplot

Histogram plot using R/python with two variables[BC and Control] and their corresponding gene names

How to change the position of groups colors in DimPlot of Seurat

Display row and column names in R

Expending UpsetR plot with Orthofinder families and gene numbers

Manually order the set fails in UpsetR

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