7

I removed my .emacs and .emacs.d, then created a new .emacs consisting of only the essential to use R and a shell with org-babel to make sure my configs weren't causing this:

(require 'org-install) (org-babel-do-load-languages 'org-babel-load-languages '( (sh . t) (R . t) )) 

When I try to run the following snippet:

#+begin_src R :results output verbatim (any R code) #+end_src 

It runs just fine. However, if I add :session or :session name to the #+begin_src header, Emacs freezes. I can't move the cursor nor do anything. I can see both R and Emacs on htop, none using any CPU. The only way to get out is to send SIGTERM to Emacs.

When running the snippet with C-c the minibuffer says:

ESS (*R*, R (newest)) starting data directory? pwd (I say yes) Cannot read history file pwd/.Rhistory 

This is normal, I get it on other computers where Emacs doesn't freeze. Then hangs forever on

ess-tracebug mode enabled 

Also normal. Except the hanging forever part.

A similar issue occurs with sh snippets:

#+begin_src sh :results output verbatim echo #+end_src 

Works fine. So with :session. However, with :session name it hangs forever just like R. All the minibuffer says is

Wrote /tmp/babel-XXXXX 

And then hangs forever on

executing sh code block... 

All packages (emacs, ess, org-mode) are the latest version from Debian stable repos. I have other computers with the same setup that work just fine. emacs --version returns GNU Emacs 24.4.1. The same happened in previous versions, and I also tried downloading Emacs 24.5.1 from a GNU mirror and compiling it. The exact same thing happens. I'm completely lost as to what could be causing this.

P.S.:

Also tried downloading latest stable ess and org-mode from the respective websites and installing and configuring for the compiled emacs. Added

(add-to-list 'load-path "/path/to/emacs-24.5/b/share/emacs/site-lisp/ess") (load "ess-site") 

To .emacs as per ess' README

1
  • A bug report like this might have better luck on the Org mailing list than on this general emacs SE site. Commented Jan 21, 2016 at 14:05

1 Answer 1

2
mv ~/.Rprofile{,.bak} mv .RData{,bak} 

I think the issue is a nonstandard options('prompt'). I (re)moved ~/.Rpofile and the .RData file for the working directory of the session and no longer had the blocking/endless waiting/frozen issue.

prompt as an issue also showed up when octave's default prompt changed: https://stackoverflow.com/questions/27742075/emacs-freezes-when-running-an-octave-code-block-within-org-mode

setting my prompt is now pretty complicated

.First <- function(...){ updatePrompt <- function(...) { # Emacs Speaks Stats, use default prompt if(options('STERM')=='iESS') options(prompt="> "); # Rstudio -- time but no colors else if( any(grepl("RStudio", .libPaths())) ) options(prompt=format(Sys.time(), "\n# %X\n#> ")) # command line R else options(prompt=format(Sys.time(), "\n\e[38;5;197m# \e[38;5;27m%X\e[0;0m\n ")) return(TRUE) } # add prompt if we're in interactive mode if(interactive()) { addTaskCallback(updatePrompt) updatePrompt() } } 

https://github.com/LabNeuroCogDevel/dotfiles/blob/master/Rprofile/.Rprofile

Start asking to get answers

Find the answer to your question by asking.

Ask question

Explore related questions

See similar questions with these tags.