nf-core / scrnaseq Star 303 Code Issues Pull requests Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection workflow rna-seq pipeline nextflow single-cell kallisto 10x-genomics 10xgenomics nf-core bustools alevin cellranger star-solo Updated Dec 4, 2025 Nextflow
COMBINE-lab / EDS Star 15 Code Issues Pull requests 💡 💾 💽 A simple, intuitive and Efficient single cell binary Data Storage format storage single-cell alevin Updated Oct 10, 2019 Rust