seqNumAllele: Number of alleles In SeqArray: Data management of large-scale whole-genome sequence variant calls Description Usage Arguments Value Author(s) See Also Examples
Description
Returns the numbers of alleles for each site.
Usage
1
seqNumAllele(gdsfile)
Arguments
gdsfile a SeqVarGDSClass object
Value
The numbers of alleles for each site.
Author(s)
Xiuwen Zheng
See Also
Examples
1 2 3 4 5 6 7 8 9 10
# the GDS file (gds.fn <- seqExampleFileName("gds")) # display f <- seqOpen(gds.fn) table(seqNumAllele(f)) # close the GDS file seqClose(f)
Example output
Loading required package: gdsfmt [1] "/usr/lib/R/site-library/SeqArray/extdata/CEU_Exon.gds" 2 3 1346 2
SeqArray documentation built on Nov. 8, 2020, 5:08 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Returns the numbers of alleles for each site.
Usage
1 | seqNumAllele(gdsfile) |
Arguments
gdsfile | a |
Value
The numbers of alleles for each site.
Author(s)
Xiuwen Zheng
See Also
Examples
1 2 3 4 5 6 7 8 9 10 | # the GDS file (gds.fn <- seqExampleFileName("gds")) # display f <- seqOpen(gds.fn) table(seqNumAllele(f)) # close the GDS file seqClose(f) |
Example output
Loading required package: gdsfmt [1] "/usr/lib/R/site-library/SeqArray/extdata/CEU_Exon.gds" 2 3 1346 2 R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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